Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| ESCA | rs58389894 | chr15:34032454 | A/G | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs5875744 | chr6:41196104 | C/CCTT | 4.51E-7 | 140 | 1.4 | 3.83 | 7.62 | KM Plot |
| ESCA | rs59471218 | chr15:34032535 | A/G | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs59494883 | chr15:34033487 | G/A | 1.83E-5 | 135 | 7.23 | 5.13 | 2.7 | KM Plot |
| ESCA | rs59538569 | chr15:34032389 | T/C | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs60153482 | chr21:46252689 | A/G | 2.6E-5 | 141 | 6.77 | 7.9 | 2.63 | KM Plot |
| ESCA | rs61219904 | chr15:34032225 | G/C | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs61852638 | chr1:247219961 | T/C | 4.47E-5 | 140 | 6.5 | 8.6 | 3.87 | KM Plot |
| ESCA | rs61852646 | chr1:247260534 | T/A | 3.17E-5 | 142 | 6.5 | 14.13 | 3.87 | KM Plot |
| ESCA | rs6426206 | chr1:247189356 | G/A | 8.77E-6 | 140 | 6.77 | 16.95 | 3.87 | KM Plot |
| ESCA | rs6426207 | chr1:247189468 | C/T | 8.77E-6 | 140 | 6.77 | 16.95 | 3.87 | KM Plot |
| ESCA | rs67226331 | chr15:34031715 | AC/A | 1.5E-5 | 135 | 7.37 | 6.08 | 2.7 | KM Plot |
| ESCA | rs72713288 | chr15:34031791 | G/A | 1.5E-5 | 135 | 7.37 | 6.08 | 2.7 | KM Plot |
| ESCA | rs72713293 | chr15:34032721 | G/C | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs72844525 | chr2:138330624 | A/C | 1.3E-6 | 140 | 7.03 | 14.9 | 1.4 | KM Plot |